IL_4V4J_017

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V4J|1|w|G|801, 4V4J|1|w|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_017 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.3277

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V4J|1|w|G|674
4V4J|1|w|A|675
4V4J|1|w|A|676
4V4J|1|w|A|677
4V4J|1|w|C|678
*
4V4J|1|w|G|799
4V4J|1|w|A|800
4V4J|1|w|G|801
4V4J|1|w|A|802
4V4J|1|w|U|803
4V4J|1|w|A|804
4V4J|1|w|G|805
4V4J|1|w|C|806

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain J

50S ribosomal protein L15