IL_4V4J_018

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

4V4J|1|w|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_018 not in the Motif Atlas

Geometric match to IL_7RQB_019

Geometric discrepancy: 0.1966

The information below is about IL_7RQB_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V4J|1|w|C|697
4V4J|1|w|C|698
*
4V4J|1|w|G|763
4V4J|1|w|A|764
4V4J|1|w|G|765

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2