3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
GAG*UCC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4J_032 not in the Motif Atlas
Homologous match to IL_7A0S_031
Geometric discrepancy: 0.2948
The information below is about IL_7A0S_031
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V4J|1|w|G|952
4V4J|1|w|A|953
4V4J|1|w|G|954
*
4V4J|1|w|U|963
4V4J|1|w|C|964
4V4J|1|w|C|965

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain K
50S ribosomal protein L16
Chain x
5S ribosomal RNA; 5S rRNA

Coloring options:


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