IL_4V4J_042

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V4J|1|w|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_042 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.5141

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4J|1|w|G|1087
4V4J|1|w|A|1088
4V4J|1|w|G|1089
4V4J|1|w|U|1090
4V4J|1|w|G|1091
*
4V4J|1|w|C|1100
4V4J|1|w|U|1101
4V4J|1|w|C|1102

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain b

50S ribosomal protein L36