3D structure

PDB id
4V4J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.83 Å

Loop

Sequence
CGAUG*UAAG
Length
9 nucleotides
Bulged bases
4V4J|1|w|U|1205
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4J_044 not in the Motif Atlas
Homologous match to IL_7RQB_046
Geometric discrepancy: 0.5558
The information below is about IL_7RQB_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_68574.2
Basepair signature
cWW-tHH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4V4J|1|w|C|1202
4V4J|1|w|G|1203
4V4J|1|w|A|1204
4V4J|1|w|U|1205
4V4J|1|w|G|1206
*
4V4J|1|w|U|1240
4V4J|1|w|A|1241
4V4J|1|w|A|1242
4V4J|1|w|G|1243

Current chains

Chain w
23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain D
50S ribosomal protein L4
Chain J
50S ribosomal protein L15

Coloring options:


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