IL_4V4J_066

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V4J|1|w|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_066 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1847

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V4J|1|w|C|1686
4V4J|1|w|G|1687
4V4J|1|w|U|1688
4V4J|1|w|A|1689
4V4J|1|w|A|1690
4V4J|1|w|C|1691
*
4V4J|1|w|G|1696
4V4J|1|w|G|1697
4V4J|1|w|A|1698
4V4J|1|w|G|1699
4V4J|1|w|A|1700
4V4J|1|w|A|1701
4V4J|1|w|G|1702

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain y

Small subunit ribosomal RNA; SSU rRNA