IL_4V4J_082

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_082 not in the Motif Atlas

Geometric match to IL_4KZD_003

Geometric discrepancy: 0.2636

The information below is about IL_4KZD_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V4J|1|w|C|2108
4V4J|1|w|U|2109
4V4J|1|w|G|2110
*
4V4J|1|w|C|2179
4V4J|1|w|U|2180
4V4J|1|w|G|2181

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

50S ribosomal protein L1

Chain l

30S ribosomal protein S11