IL_4V4J_083

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4J|1|w|G|2110
4V4J|1|w|C|2111
4V4J|1|w|G|2112
4V4J|1|w|U|2113
4V4J|1|w|A|2114
4V4J|1|w|G|2115
4V4J|1|w|G|2116
4V4J|1|w|A|2117
4V4J|1|w|U|2118
4V4J|1|w|A|2119
4V4J|1|w|G|2120
*
4V4J|1|w|C|2178
4V4J|1|w|C|2179

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

50S ribosomal protein L1