IL_4V4J_085

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4V4J|1|w|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_085 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4628

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V4J|1|w|C|2129
4V4J|1|w|U|2130
4V4J|1|w|G|2131
4V4J|1|w|U|2132
4V4J|1|w|G|2133
4V4J|1|w|A|2134
4V4J|1|w|A|2135
4V4J|1|w|C|2136
*
4V4J|1|w|G|2155
4V4J|1|w|G|2156
4V4J|1|w|G|2157
4V4J|1|w|A|2158
4V4J|1|w|G|2159

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L1