IL_4V4J_086

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_086 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.5083

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V4J|1|w|C|2297
4V4J|1|w|A|2298
4V4J|1|w|G|2299
*
4V4J|1|w|C|2317
4V4J|1|w|G|2318
4V4J|1|w|G|2319
4V4J|1|w|A|2320
4V4J|1|w|G|2321

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L5

Chain M

50S ribosomal protein L18

Chain x

5S ribosomal RNA; 5S rRNA