IL_4V4J_095

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V4J|1|w|A|2572, 4V4J|1|w|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_095 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.1637

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V4J|1|w|C|2512
4V4J|1|w|G|2513
*
4V4J|1|w|C|2571
4V4J|1|w|A|2572
4V4J|1|w|C|2573
4V4J|1|w|G|2574

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L3