IL_4V4J_097

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V4J|1|w|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_097 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.5035

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V4J|1|w|C|2591
4V4J|1|w|G|2592
*
4V4J|1|w|C|2601
4V4J|1|w|A|2602
4V4J|1|w|G|2603

Current chains

Chain w

23S LARGE SUBUNIT RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain z

Transfer RNA; tRNA