IL_4V4J_106
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_106 not in the Motif Atlas
- Homologous match to IL_5J7L_354
- Geometric discrepancy: 0.3016
- The information below is about IL_5J7L_354
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_70411.2
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V4J|1|w|U|2847
4V4J|1|w|G|2848
4V4J|1|w|U|2849
4V4J|1|w|A|2850
4V4J|1|w|A|2851
4V4J|1|w|G|2852
*
4V4J|1|w|U|2865
4V4J|1|w|U|2866
4V4J|1|w|G|2867
4V4J|1|w|A|2868
4V4J|1|w|G|2869
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain L
- 50S ribosomal protein L17
- Chain N
- 50S ribosomal protein L19
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