IL_4V4J_110
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- 4V4J|1|x|U|35, 4V4J|1|x|C|36
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_110 not in the Motif Atlas
- Homologous match to IL_4WF9_115
- Geometric discrepancy: 0.3727
- The information below is about IL_4WF9_115
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V4J|1|x|U|34
4V4J|1|x|U|35
4V4J|1|x|C|36
4V4J|1|x|C|37
4V4J|1|x|C|38
*
4V4J|1|x|G|44
4V4J|1|x|A|45
4V4J|1|x|A|46
4V4J|1|x|C|47
4V4J|1|x|A|48
Current chains
- Chain x
- 5S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L18
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: