IL_4V4J_118

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_118 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.2915

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V4J|1|y|C|132
4V4J|1|y|U|133
4V4J|1|y|A|134
4V4J|1|y|C|135
4V4J|1|y|C|136
*
4V4J|1|y|G|227
4V4J|1|y|A|228
4V4J|1|y|U|229
4V4J|1|y|G|230

Current chains

Chain y

16S RNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20