IL_4V4J_131

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_131 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.1929

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4V4J|1|y|C|504
4V4J|1|y|G|505
4V4J|1|y|G|506
4V4J|1|y|C|507
4V4J|1|y|C|508
4V4J|1|y|A|509
4V4J|1|y|A|510
4V4J|1|y|C|511
*
4V4J|1|y|G|540
4V4J|1|y|G|541

Current chains

Chain y

16S RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12