IL_4V4J_155
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_155 not in the Motif Atlas
- Geometric match to IL_5VCI_001
- Geometric discrepancy: 0.2884
- The information below is about IL_5VCI_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 27
Unit IDs
4V4J|1|y|G|1061
4V4J|1|y|U|1062
4V4J|1|y|C|1063
*
4V4J|1|y|G|1193
4V4J|1|y|U|1194
4V4J|1|y|C|1195
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain f
- 30S ribosomal protein S5
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14 type Z
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