IL_4V4J_162

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_162 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.3395

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V4J|1|y|C|1303
4V4J|1|y|G|1304
4V4J|1|y|G|1305
4V4J|1|y|A|1306
4V4J|1|y|U|1307
4V4J|1|y|U|1308
*
4V4J|1|y|A|1329
4V4J|1|y|U|1330
4V4J|1|y|G|1331
4V4J|1|y|A|1332
4V4J|1|y|A|1333
4V4J|1|y|G|1334

Current chains

Chain y

16S RNA

Nearby chains

Chain n

30S ribosomal protein S13

Chain v

30S ribosomal protein Thx