IL_4V4J_167

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_167 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.2683

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V4J|1|y|C|1431
4V4J|1|y|G|1432
4V4J|1|y|A|1433
4V4J|1|y|A|1434
4V4J|1|y|G|1435
*
4V4J|1|y|C|1466
4V4J|1|y|G|1467
4V4J|1|y|A|1468
4V4J|1|y|G|1469

Current chains

Chain y

16S RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain u

30S ribosomal protein S20