IL_4V4J_168

3D structure

PDB id

4V4J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.83 Å

Loop

Sequence

GUC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4J_168 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.1398

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V4J|1|y|G|1435
4V4J|1|y|U|1436
4V4J|1|y|C|1437
*
4V4J|1|y|G|1464
4V4J|1|y|C|1465
4V4J|1|y|C|1466

Current chains

Chain y

16S RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain u

30S ribosomal protein S20

Chain w

Large subunit ribosomal RNA; LSU rRNA