IL_4V4J_171
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- 4V4J|1|w|G|620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_171 not in the Motif Atlas
- Homologous match to IL_7A0S_013
- Geometric discrepancy: 0.3367
- The information below is about IL_7A0S_013
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4J|1|w|U|606
4V4J|1|w|U|607
4V4J|1|w|A|608
4V4J|1|w|A|609|||A
4V4J|1|w|G|609|||B
*
4V4J|1|w|C|618|||B
4V4J|1|w|G|619
4V4J|1|w|G|620
4V4J|1|w|A|621
4V4J|1|w|G|622
Current chains
- Chain w
- 23S LARGE SUBUNIT RIBOSOMAL RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
Coloring options: