IL_4V4J_187
3D structure
- PDB id
- 4V4J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.83 Å
Loop
- Sequence
- GU(5MC)*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4J_187 not in the Motif Atlas
- Homologous match to IL_5J7L_363
- Geometric discrepancy: 0.2241
- The information below is about IL_5J7L_363
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V4J|1|y|G|1405
4V4J|1|y|U|1406
4V4J|1|y|5MC|1407
*
4V4J|1|y|G|1494
4V4J|1|y|U|1495
4V4J|1|y|C|1496
Current chains
- Chain y
- 16S RNA
Nearby chains
- Chain 3
- MRNA
- Chain n
- 30S ribosomal protein S13
- Chain w
- Large subunit ribosomal RNA; LSU rRNA
- Chain z
- Transfer RNA; tRNA
Coloring options: