IL_4V4P_023

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_023 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.4845

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4P|1|AA|G|875
4V4P|1|AA|C|876
4V4P|1|AA|U|877
4V4P|1|AA|A|878
4V4P|1|AA|G|879
*
4V4P|1|AA|C|898
4V4P|1|AA|A|899
4V4P|1|AA|A|900
4V4P|1|AA|A|901
4V4P|1|AA|C|902

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AP

50S ribosomal protein L16

Chain AV

50S general stress protein CTC (L25)

Chain BB

Transfer RNA; tRNA