IL_4V4P_028

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCCCCAAGUC*GCG

Length

13 nucleotides

Bulged bases

4V4P|1|AA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_028 not in the Motif Atlas

Geometric match to IL_8C3A_118

Geometric discrepancy: 0.2027

The information below is about IL_8C3A_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V4P|1|AA|C|1004
4V4P|1|AA|C|1005
4V4P|1|AA|C|1006
4V4P|1|AA|C|1007
4V4P|1|AA|C|1008
4V4P|1|AA|A|1009
4V4P|1|AA|A|1010
4V4P|1|AA|G|1011
4V4P|1|AA|U|1012
4V4P|1|AA|C|1013
*
4V4P|1|AA|G|1149
4V4P|1|AA|C|1150
4V4P|1|AA|G|1151

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L20

Chain AM

50S ribosomal protein L13