IL_4V4P_064

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGAGG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_064 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3737

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4P|1|AA|C|2350
4V4P|1|AA|G|2351
4V4P|1|AA|A|2352
4V4P|1|AA|G|2353
4V4P|1|AA|G|2354
*
4V4P|1|AA|C|2363
4V4P|1|AA|C|2364
4V4P|1|AA|G|2365
4V4P|1|AA|A|2366
4V4P|1|AA|G|2367

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L27

Chain A8

50S ribosomal protein L35

Chain AQ

50S ribosomal protein L18