IL_4V4P_065

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

4V4P|1|AA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_065 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3051

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4V4P|1|AA|U|2401
4V4P|1|AA|C|2402
4V4P|1|AA|C|2403
*
4V4P|1|AA|G|2414
4V4P|1|AA|G|2415

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L31

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AO

50S ribosomal protein L15