IL_4V4P_070

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCUC*GCGAGC

Length

10 nucleotides

Bulged bases

4V4P|1|AA|G|2576, 4V4P|1|AA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_070 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3761

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

4V4P|1|AA|G|2509
4V4P|1|AA|C|2510
4V4P|1|AA|U|2511
4V4P|1|AA|C|2512
*
4V4P|1|AA|G|2574
4V4P|1|AA|C|2575
4V4P|1|AA|G|2576
4V4P|1|AA|A|2577
4V4P|1|AA|G|2578
4V4P|1|AA|C|2579

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3