IL_4V4P_085

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UGCGAGA*UA

Length

9 nucleotides

Bulged bases

4V4P|1|BA|G|31

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_085 not in the Motif Atlas

Homologous match to IL_4LFB_001

Geometric discrepancy: 0.3129

The information below is about IL_4LFB_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V4P|1|BA|U|30
4V4P|1|BA|G|30|||A
4V4P|1|BA|C|30|||B
4V4P|1|BA|G|30|||C
4V4P|1|BA|A|30|||D
4V4P|1|BA|G|31
4V4P|1|BA|A|32
*
4V4P|1|BA|U|552
4V4P|1|BA|A|553

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

30S ribosomal protein S12