IL_4V4P_086

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GUG*CGAC

Length

7 nucleotides

Bulged bases

4V4P|1|BA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_086 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3502

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V4P|1|BA|G|44
4V4P|1|BA|U|45
4V4P|1|BA|G|46
*
4V4P|1|BA|C|395
4V4P|1|BA|G|396
4V4P|1|BA|A|397
4V4P|1|BA|C|398

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BS

30S ribosomal protein S16