IL_4V4P_125
3D structure
- PDB id
- 4V4P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of 70S ribosome with thrS operator and tRNAs.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4V4P|1|BA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4P_125 not in the Motif Atlas
- Geometric match to IL_2PN3_003
- Geometric discrepancy: 0.3441
- The information below is about IL_2PN3_003
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
4V4P|1|BA|C|1060
4V4P|1|BA|G|1061
*
4V4P|1|BA|C|1195
4V4P|1|BA|U|1196
4V4P|1|BA|G|1197
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain B1
- thrS mRNA operator
- Chain BB
- Transfer RNA; tRNA
- Chain BF
- 30S ribosomal protein S3
- Chain BH
- 30S ribosomal protein S5
- Chain BL
- 30S ribosomal protein S9
- Chain BM
- 30S ribosomal protein S10
- Chain BQ
- 30S ribosomal protein S14
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