IL_4V4P_141

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

UCGGACACCGAAUCC*GGAUAGGUGA

Length

25 nucleotides

Bulged bases

4V4P|1|AA|G|275, 4V4P|1|AA|A|276, 4V4P|1|AA|C|277, 4V4P|1|AA|C|279, 4V4P|1|AA|G|281, 4V4P|1|AA|A|282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|U|273|||E
4V4P|1|AA|C|273|||F
4V4P|1|AA|G|274
4V4P|1|AA|G|275
4V4P|1|AA|A|276
4V4P|1|AA|C|277
4V4P|1|AA|A|278
4V4P|1|AA|C|279
4V4P|1|AA|C|280
4V4P|1|AA|G|281
4V4P|1|AA|A|282
4V4P|1|AA|A|283
4V4P|1|AA|U|284
4V4P|1|AA|C|285
4V4P|1|AA|C|286
*
4V4P|1|AA|G|355
4V4P|1|AA|G|356
4V4P|1|AA|A|357
4V4P|1|AA|U|358
4V4P|1|AA|A|359
4V4P|1|AA|G|360
4V4P|1|AA|G|361
4V4P|1|AA|U|362
4V4P|1|AA|G|363
4V4P|1|AA|A|363|||A

Current chains

Chain AA

23S ribosomal RNA

Nearby chains