IL_4V4P_165

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGGGUGUAAG*UUGAGCCGAC

Length

20 nucleotides

Bulged bases

4V4P|1|AA|U|2849, 4V4P|1|AA|G|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4P|1|AA|G|2843
4V4P|1|AA|G|2844
4V4P|1|AA|G|2845
4V4P|1|AA|G|2846
4V4P|1|AA|U|2847
4V4P|1|AA|G|2848
4V4P|1|AA|U|2849
4V4P|1|AA|A|2850
4V4P|1|AA|A|2851
4V4P|1|AA|G|2852
*
4V4P|1|AA|U|2865
4V4P|1|AA|U|2866
4V4P|1|AA|G|2867
4V4P|1|AA|A|2868
4V4P|1|AA|G|2869
4V4P|1|AA|C|2870
4V4P|1|AA|C|2871
4V4P|1|AA|G|2872
4V4P|1|AA|A|2873
4V4P|1|AA|C|2874

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L17

Chain AE

50S ribosomal protein L3

Chain AR

50S ribosomal protein L19