IL_4V4P_171

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_171 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2617

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V4P|1|BA|G|774
4V4P|1|BA|G|775
4V4P|1|BA|G|776
4V4P|1|BA|A|777
4V4P|1|BA|G|778
4V4P|1|BA|C|779
*
4V4P|1|BA|G|803
4V4P|1|BA|U|804
4V4P|1|BA|C|805

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AD

50S ribosomal protein L2

Chain BN

30S ribosomal protein S11