IL_4V4P_182

3D structure

PDB id

4V4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 70S ribosome with thrS operator and tRNAs.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

4V4P|1|AA|U|1991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4P_182 not in the Motif Atlas

Geometric match to IL_9DFE_066

Geometric discrepancy: 0.2416

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4V4P|1|AA|G|1666
4V4P|1|AA|G|1667
4V4P|1|AA|A|1668
4V4P|1|AA|A|1669
4V4P|1|AA|C|1670
4V4P|1|AA|U|1671
4V4P|1|AA|C|1672
4V4P|1|AA|U|1673
4V4P|1|AA|G|1674
*
4V4P|1|AA|C|1990
4V4P|1|AA|U|1991
4V4P|1|AA|G|1992
4V4P|1|AA|U|1993
4V4P|1|AA|C|1994

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AN

50S ribosomal protein L14