3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
UAGU*AG
Length
6 nucleotides
Bulged bases
4V4Q|1|AA|G|251
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_015 not in the Motif Atlas
Homologous match to IL_5J7L_015
Geometric discrepancy: 0.3393
The information below is about IL_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47074.2
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
4

Unit IDs

4V4Q|1|AA|U|249
4V4Q|1|AA|A|250
4V4Q|1|AA|G|251
4V4Q|1|AA|U|252
*
4V4Q|1|AA|A|274
4V4Q|1|AA|G|275

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AQ
30S ribosomal protein S17
Chain BB
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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