3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
4V4Q|1|BB|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_116 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.1484
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

4V4Q|1|BB|C|1208
4V4Q|1|BB|U|1209
4V4Q|1|BB|G|1210
4V4Q|1|BB|C|1211
4V4Q|1|BB|G|1212
4V4Q|1|BB|A|1213
4V4Q|1|BB|A|1214
4V4Q|1|BB|G|1215
*
4V4Q|1|BB|U|1234
4V4Q|1|BB|G|1235
4V4Q|1|BB|G|1236
4V4Q|1|BB|A|1237
4V4Q|1|BB|G|1238

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain BL
50S ribosomal protein L15
Chain BQ
50S ribosomal protein L20

Coloring options:


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