IL_4V4Q_197

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V4Q|1|CA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12789.1

Basepair signature

cWW-tSH-cWH-tWH-tSS-tHW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4Q|1|CA|U|409
4V4Q|1|CA|G|410
4V4Q|1|CA|A|411
4V4Q|1|CA|A|412
4V4Q|1|CA|G|413
4V4Q|1|CA|A|414
4V4Q|1|CA|A|415
4V4Q|1|CA|G|416
*
4V4Q|1|CA|U|427
4V4Q|1|CA|G|428
4V4Q|1|CA|U|429
4V4Q|1|CA|A|430
4V4Q|1|CA|A|431
4V4Q|1|CA|A|432
4V4Q|1|CA|G|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4