Motif IL_12789.1 Version IL_12789.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 4-9 | 5-11 | 6-9 | 7-8 | 10-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_017 | 1FJG | 0.0000 | 1 | A | SSU rRNA | G | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | C | 433 | cWW | tSH | tWH | tSS | tHW | tHH | cWW | cWH |
| 2 | IL_4V4Q_197 | 4V4Q | 0.3102 | 1 | CA | SSU rRNA | U | 409 | G | 410 | A | 411 | G | 413 | A | 414 | A | 415 | G | 416 | * | U | 427 | G | 428 | U | 429 | A | 430 | A | 431 | A | 432 | G | 433 | cWW | tSH | tWH | ntHW | ncWW | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAGAAG*UGUAAAC | 1 |
| UGAAGAAG*UGUAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAA*GUAAA | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-cWH-tWH-tSS-tHW-L-cWW
- Heat map statistics
- Min 0.31 | Avg 0.16 | Max 0.31
Coloring options: