IL_4V4Q_257

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_257 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0685

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V4Q|1|DB|C|239
4V4Q|1|DB|C|240
4V4Q|1|DB|A|241
4V4Q|1|DB|G|242
4V4Q|1|DB|U|243
4V4Q|1|DB|A|244
4V4Q|1|DB|G|245
*
4V4Q|1|DB|C|253
4V4Q|1|DB|G|254
4V4Q|1|DB|A|255
4V4Q|1|DB|A|256
4V4Q|1|DB|C|257
4V4Q|1|DB|G|258

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15