IL_4V4R_019

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4R_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1731

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4R|1|AA|G|450
4V4R|1|AA|A|451
4V4R|1|AA|A|452
4V4R|1|AA|A|453
4V4R|1|AA|C|454
4V4R|1|AA|C|455
*
4V4R|1|AA|G|477
4V4R|1|AA|A|478
4V4R|1|AA|C|479
4V4R|1|AA|U|480
4V4R|1|AA|G|481
4V4R|1|AA|A|482
4V4R|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16