IL_4V4R_049

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V4R|1|AA|C|1400, 4V4R|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4R_049 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.2508

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V4R|1|AA|C|1399
4V4R|1|AA|C|1400
4V4R|1|AA|G|1401
*
4V4R|1|AA|C|1501
4V4R|1|AA|A|1502
4V4R|1|AA|A|1503
4V4R|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'

Chain AY

Peptide chain release factor 1