IL_4V4R_051

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4R_051 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.1629

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V4R|1|AA|G|1405
4V4R|1|AA|U|1406
4V4R|1|AA|C|1407
*
4V4R|1|AA|G|1494
4V4R|1|AA|U|1495
4V4R|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AX

5'-R(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'

Chain AY

Peptide chain release factor 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA