IL_4V4R_078

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4R_078 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.3264

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

4V4R|1|BA|G|864
4V4R|1|BA|C|865
4V4R|1|BA|A|866
4V4R|1|BA|C|867
4V4R|1|BA|U|868
*
4V4R|1|BA|A|909
4V4R|1|BA|A|910
4V4R|1|BA|A|911
4V4R|1|BA|C|912

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16