Motif IL_16301.1 Version IL_16301.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-3 | 1-9 | 2-4 | 2-6 | 4-9 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_293 | 8GLP | 0.2218 | 1 | C-loop with bulged stacked A's (H) | L5 | LSU rRNA | G | 1739 | C | 1740 | A | 1742 | A | 1743 | PSU | 1744 | * | A | 1786 | A | 1787 | A | 1788 | C | 1789 | cWW | tWH | cWS | cWW | ||
| 2 | IL_8OI5_043 | 8OI5 | 0.0649 | 1 | C-loop with bulged stacked A's (H) | 1 | LSU rRNA | G | 995 | C | 996 | A | 998 | A | 999 | U | 1000 | * | A | 1042 | A | 1043 | A | 1044 | C | 1045 | cWW | tWH | cWS | cWW | ||
| 3 | IL_8P9A_268 | 8P9A | 0.0000 | 1 | C-loop with bulged stacked A's | AR | LSU rRNA | G | 999 | C | 1000 | A | 1002 | A | 1003 | U | 1004 | * | A | 1046 | A | 1047 | A | 1048 | C | 1049 | cWW | tWH | cWS | cWW | ||
| 4 | IL_9AXU_039 | 9AXU | 0.0835 | 1 | C-loop with bulged stacked A's (H) | 2 | LSU rRNA | G | 1031 | C | 1032 | A | 1034 | A | 1035 | U | 1036 | * | A | 1078 | A | 1079 | A | 1080 | C | 1081 | cWW | tWH | cWS | cWW | ||
| 5 | IL_9E6Q_039 | 9E6Q | 0.2384 | 0 | 1 | LSU rRNA | G | 983 | U | 984 | A | 985 | C | 986 | U | 987 | * | A | 1028 | A | 1029 | A | 1030 | C | 1031 | cWW | tWH | cWS | cWW | |||
| 6 | IL_7A0S_029 | 7A0S | 0.3265 | 0 | C-loop | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | A | 922 | A | 923 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW |
| 7 | IL_4WF9_033 | 4WF9 | 0.3034 | 0 | C-loop | X | LSU rRNA | G | 909 | C | 910 | A | 911 | C | 912 | U | 913 | * | A | 954 | A | 955 | A | 956 | C | 957 | tSW | cWW | cSH | tWH | cWS | cWW |
| 8 | IL_9DFE_028 | 9DFE | 0.3607 | 0 | C-loop with bulged stacked A's | 1A | LSU rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | A | 910 | A | 911 | C | 912 | tSW | cWW | cSH | tWH | cWS | cWW |
| 9 | IL_8B0X_092 | 8B0X | 0.3242 | 0 | C-loop with bulged stacked A's (H) | a | LSU rRNA | G | 866 | C | 867 | A | 868 | C | 869 | U | 870 | * | A | 911 | A | 912 | A | 913 | C | 914 | cWW | cSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 4 |
| GCGAAU*AAAC | 3 |
| GCGAA(PSU)*AAAC | 1 |
| GUACU*AAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAA*AA | 4 |
| CAC*AA | 4 |
| UAC*AA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop with bulged stacked A's (H) (4)
- C-loop (2)
- C-loop with bulged stacked A's (2)
- (1)
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Heat map statistics
- Min 0.06 | Avg 0.24 | Max 0.44
Coloring options: