IL_4V4R_136
3D structure
- PDB id
- 4V4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.9 Å
Loop
- Sequence
- GCG*CAGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4R_136 not in the Motif Atlas
- Geometric match to IL_3LOA_003
- Geometric discrepancy: 0.3825
- The information below is about IL_3LOA_003
- Detailed Annotation
- Decoding loop with one bulged A
- Broad Annotation
- Decoding loop with one bulged A
- Motif group
- IL_08770.1
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V4R|1|BB|G|16
4V4R|1|BB|C|17
4V4R|1|BB|G|18
*
4V4R|1|BB|C|65
4V4R|1|BB|A|66
4V4R|1|BB|G|67
4V4R|1|BB|C|68
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BS
- 50S ribosomal protein L18
- Chain BZ
- 50S ribosomal protein CTC
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