Motif IL_55553.2 Version IL_55553.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_464 | 8P9A | 0.5924 | 0 | Isolated tWW contact | sR | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | |
| 2 | IL_9E7E_002 | 9E7E | 0.4967 | 0 | C | Rev Response Element SLII A31C/G39C | C | 28 | U | 29 | G | 30 | * | C | 14 | A | 15 | G | 16 | cWW | tWW | cWW | |
| 3 | IL_8CRE_450 | 8CRE | 0.5103 | 0 | Other IL (H) | CM | SSU rRNA | A | 1219 | C | 1220 | A | 1221 | * | U | 1234 | U | 1235 | U | 1236 | cWW | cWW | |
| 4 | IL_3LOA_003 | 3LOA | 0.2732 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 5 | IL_2ET8_003 | 2ET8 | 0.0000 | 1 | Decoding loop related | A+B | RNA (22-mer) | G | 15 | A | 17 | G | 18 | * | C | 29 | A | 30 | C | 31 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 2 |
| CAG*UAG | 1 |
| CUG*CAG | 1 |
| ACA*UUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*A | 2 |
| A*A | 1 |
| U*A | 1 |
| C*U | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Decoding loop related (1)
- Decoding loop with one bulged A (1)
- Other IL (H) (1)
- Isolated tWW contact (1)
- (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.27 | Avg 0.42 | Max 0.64
Coloring options: