IL_4V4S_020

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGGCCAACU*AGG

Length

12 nucleotides

Bulged bases

4V4S|1|AA|C|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_020 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2819

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V4S|1|AA|C|504
4V4S|1|AA|G|505
4V4S|1|AA|G|506
4V4S|1|AA|C|507
4V4S|1|AA|C|508
4V4S|1|AA|A|509
4V4S|1|AA|A|510
4V4S|1|AA|C|511
4V4S|1|AA|U|512
*
4V4S|1|AA|A|539
4V4S|1|AA|G|540
4V4S|1|AA|G|541

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AE

30S ribosomal protein S5

Chain AL

30S ribosomal protein S12