IL_4V4S_063

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_063 not in the Motif Atlas

Homologous match to IL_4WF9_007

Geometric discrepancy: 0.2895

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V4S|1|BA|C|183
4V4S|1|BA|C|184
*
4V4S|1|BA|G|212
4V4S|1|BA|A|213
4V4S|1|BA|G|214

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34