IL_4V4S_064

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_064 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.1676

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4S|1|BA|G|188
4V4S|1|BA|G|189
4V4S|1|BA|A|190
4V4S|1|BA|A|191
4V4S|1|BA|C|192
4V4S|1|BA|U|193
4V4S|1|BA|G|194
*
4V4S|1|BA|C|201
4V4S|1|BA|U|202
4V4S|1|BA|C|203
4V4S|1|BA|A|204
4V4S|1|BA|G|205
4V4S|1|BA|U|206
4V4S|1|BA|A|207
4V4S|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain B7

50S ribosomal protein L34