3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4S_074 not in the Motif Atlas
Homologous match to IL_7A0S_022
Geometric discrepancy: 0.1805
The information below is about IL_7A0S_022
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

4V4S|1|BA|C|837
4V4S|1|BA|C|838
*
4V4S|1|BA|G|940
4V4S|1|BA|A|941
4V4S|1|BA|G|942

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B8
50S ribosomal protein L35

Coloring options:


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